Research Data Management with DataLad: Episode/lesson template

A lesson consists of one or more episodes, each of which has:

The diagram below shows the internal structure of a single episode file (click on the image to see a larger version):

Formatting Rules

Maximum Line Length

Limit all lines to a maximum of 100 characters. bin/lesson_check.py will report lines longer than 100 characters and this can block your contributions of being accepted.

The two reasons behind the decision to enforce a maximum line length are (1) make diff and merge easier in the command line and other user interfaces and (2) make update of translation of the lessons easier.

Locations and Names

Episode files are stored in _episodes or, for the case of R Markdown files, _episodes_rmd so that Jekyll will create a collection for them. Episodes are named dd-subject.md, where dd is a two-digit sequence number (with a leading 0) and subject is a one- or two-word identifier. For example, the first three episodes of this example lesson are _episodes/01-design.md, _episodes/02-tooling.md and _episodes/03-formatting.md. These become /01-design/index.html, /02-tooling/index.html, and /03-formatting/index.html in the published site. When referring to other episodes, use:

[link text]({{ page.root }}{% link _episodes/dd-subject.md %})

i.e., use Jekyll’s link tag and the name of the file.

Episode Header

Each episode’s YAML header must contain:

These values are stored in the header so that Jekyll will read them and make them accessible in other pages as site.episodes.the_episode.key, where the_episode is the particular episode and key is the key in the YAML header. This lets us do things like list each episode’s key questions in the syllabus on the lesson home page.

Episode Structure

The episode layout template in _layouts/episode.html automatically creates an introductory block that summarizes the lesson’s teaching time, exercise time, key questions, and objectives. It also automatically creates a closing block that lists its key points. In between, authors should use only:

Authors should not use:

Linking section IDs

In the HTML output each header of a section, code sample, exercise will be associated with an unique ID (the rules of the ID generation are given in kramdown documentation, but it is easier to look for them directly in the page sources). These IDs can be used to easily link to the section by attaching the hash (#) followed by the ID to the page’s URL (like this). For example, the instructor might copy the link to the etherpad, so that the lesson opens in learners’ web browser directly at the right spot.

Formatting Code

Inline code fragments are formatted using back-quotes. Longer code blocks are formatted by opening and closing the block with ~~~ (three tildes), with a class specifier after the block:

~~~
for thing in collection:
    do_something
~~~
{: .source}

which is rendered as:

for thing in collection:
    do_something

The class specified at the bottom using an opening curly brace and colon, the class identifier with a leading dot, and a closing curly brace. The template provides three styles for code blocks:

.source: program source.

.output: program output.

.error: error messages.

Syntax Highlighting

The following styles like .source, but include syntax highlighting for the specified language. Please use them where possible to indicate the type of source being displayed, and to make code easier to read.

.language-bash: Bash shell commands:

echo "Hello World"

.language-html: HTML source:

<html>
<body>
<em>Hello World</em>
</body>
</html>

.language-make: Makefiles:

all:
    g++ main.cpp hello.cpp -o hello

.language-matlab: MATLAB source:

disp('Hello, world!')

.language-python: Python source:

print("Hello World")

.language-r: R source:

cat("Hello World")

.language-sql: SQL source:

CREATE PROCEDURE HelloWorld AS
PRINT 'Hello, world!'
RETURN (0)

Highlighting for other languages

You may use other language-* classes to activate syntax highlighting for other languages. For example,

~~~
title: "YAML Highlighting Example"
description: "This is an example of syntax highlighting for YAML."
array_values:
    - value_1
    - value_2
~~~
{: .language-yaml }

will produce this:

title: "YAML Highlighting Example"
description: "This is an example of syntax highlighting for YAML."
array_values:
    - value_1
    - value_2

Note that using .language-* classes other than .language-bash .language-html, .language-make, .language-matlab, .language-python, .language-r, or .language-sql will currently cause one of the tests in the lesson template’s make lesson-check to fail for your lesson, but will not prevent lesson pages from building and rendering correctly.

Special Blockquotes

We use blockquotes to group headings and text rather than wrapping them in div elements. in order to avoid confusing Jekyll’s parser (which sometimes has trouble with Markdown inside HTML). Each special blockquote must begin with a level-2 header, but may contain anything after that. For example, a callout is formatted like this:

> ## Callout Title
>
> text
> text
> text
>
> ~~~
> code
> ~~~
> {: .source}
{: .callout}

(Note the empty lines within the blockquote after the title and before the code block.) This is rendered as:

Callout Title

text text text

code

The lesson template defines styles for the following special blockquotes:

.callout

An aside or other comment.

.challenge

An exercise.

.checklist

Checklists.

.discussion

Discussion questions.

.keypoints

Key points of an episode.

.objectives

Episode objectives.

.prereq

Prerequisites.

.solution

Exercise solution.

.testimonial

A laudatory quote from a user.

Note that .objectives and .prereq have the same color but different icons. Note also that one other class, .quotation, is used to mark actual quotations (the original purpose of the blockquote element). This does not add any styling, but is used to prevent the checking tools from complaining about a missing class.

Most authors will only use .callout, .challenge, and .prereq, as the others are automatically generated by the template. Note that .prereq is meant for describing things that learners should know before starting this lesson; setup instructions do not have a particular style, but are instead put on the setup.md page.

Note also that solutions are nested inside exercises as shown below:

> ## Challenge Title
>
> This is the body of the challenge.
>
> ~~~
> it may include some code
> ~~~
> {: .source}
>
> > ## Solution
> >
> > This is the body of the solution.
> >
> > ~~~
> > it may also include some code
> > ~~~
> > {: .output}
> {: .solution}
{: .challenge}

which is rendered as:

Challenge Title

This is the body of the challenge.

it may include some code

Solution

This is the body of the solution.

it may also include some code

The double indentation is annoying to edit, but the alternatives we considered and discarded are worse:

  1. Use HTML <div> elements for the challenges. Most people dislike mixing HTML and Markdown, and experience shows that it’s all too easy to confuse Jekyll’s Markdown parser.

  2. Put solutions immediately after challenges rather than inside them. This is simpler to edit, but clutters up the page and makes it harder for tools to tell which solutions belong to which exercises.

Applying a Shadow to Images

By default, images in the lesson are displayed without borders or shadows. In some circumstances, it may be desirable to make images stand out from the background of the page, for example, when using screenshots that include text on white background. You can add a drop shadow effect to images by applying the image-with-shadow class to them:

![image alt text](path/to/image/source.svg){: .image-with-shadow }